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b3gat1.S beta-1,3-glucuronyltransferase 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108697547, updated on 4-Nov-2024

Summary

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Official Symbol
b3gat1.S
Official Full Name
beta-1,3-glucuronyltransferase 1 S homeolog
Primary source
Xenbase:XB-GENE-18005873
Locus tag
XELAEV_18037277mg
See related
EnsemblRapid:ENSXLAG00005004824 AllianceGenome:Xenbase:XB-GENE-18005873
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity and metal ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process; chondroitin sulfate proteoglycan biosynthetic process; and protein glycosylation. Predicted to be located in Golgi membrane and extracellular region. Orthologous to human B3GAT1 (beta-1,3-glucuronyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See b3gat1.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (55177048..55231539)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (42562636..42584478, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene sodium channel, voltage gated, type III beta subunit S homeolog Neighboring gene ATPase, H+/K+ transporting, nongastric, alpha polypeptide S homeolog Neighboring gene galactosidase beta 1 like 2 S homeolog Neighboring gene VPS26 retromer complex component B S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    55177048..55231539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041571281.1 → XP_041427215.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8J1LEW8
    Conserved Domains (1) summary
    cd00218
    Location:48 → 280
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_018227683.2 → XP_018083172.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J0TCB9
    Related
    ENSXLAP00005014406.1, ENSXLAT00005014602.1

  3. XM_041571280.1 → XP_041427214.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A1L8FFI7, A0A974CBV6
    Conserved Domains (1) summary
    pfam03360
    Location:118 → 328
    Glyco_transf_43; Glycosyltransferase family 43
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases