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LOC108672094 carotenoid isomerooxygenase [ Hyalella azteca ]

Gene ID: 108672094, updated on 30-Nov-2023

Summary

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Gene symbol
LOC108672094
Gene description
carotenoid isomerooxygenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Hyalella azteca
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Peracarida; Amphipoda; Senticaudata; Talitrida; Talitroidea; Hyalellidae; Hyalella
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Genomic context

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See LOC108672094 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Hazt_2.0.2 (GCF_000764305.2) Unplaced Scaffold NW_025935587.1 (34390..39400, complement)
100 previous assembly Hazt_2.0 (GCF_000764305.1) Unplaced Scaffold NW_017245184.1 (34388..37278, complement)

NW_025935587.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: carotenoid isomerooxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hyalella azteca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hazt_2.0.2 Primary Assembly

Genomic

  1. NW_025935587.1 Reference Hazt_2.0.2 Primary Assembly

    Range
    34390..39400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047880441.1 → XP_047736397.1  LOW QUALITY PROTEIN: carotenoid isomerooxygenase

    UniProtKB/TrEMBL
    A0A979FI49
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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