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LOC108648854 oocyte zinc finger protein XlCOF22-like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 108648854, updated on 4-Nov-2024

Summary

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Official Symbol
LOC108648854provided by Xenbase
Official Full Name
oocyte zinc finger protein XlCOF22-likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-29091295
See related
Ensembl:ENSXETG00000042671 AllianceGenome:Xenbase:XB-GENE-29091295
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See LOC108648854 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (4156624..4169006, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (247155..251062, complement)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene H2A clustered histone 14 Neighboring gene oocyte zinc finger protein XlCOF7.1-like Neighboring gene gastrula zinc finger protein XlCGF53.1-like Neighboring gene gastrula zinc finger protein XlCGF17.1-like Neighboring gene oocyte zinc finger protein XlCOF22-like Neighboring gene uncharacterized LOC116407606

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF22-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    4156624..4169006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031893031.1 → XP_031748891.1  oocyte zinc finger protein XlCOF22-like

    UniProtKB/TrEMBL
    A0A803J5R6
    Related
    ENSXETP00000102946.1, ENSXETT00000124340.1
    Conserved Domains (2) summary
    COG5048
    Location:125 → 510
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:129 → 149
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_018097398.2 → XP_017952887.2  oocyte zinc finger protein XlCOF22-like

    UniProtKB/TrEMBL
    A0A803J5R6
    Related
    ENSXETP00000117969.1, ENSXETT00000122600.1
    Conserved Domains (2) summary
    COG5048
    Location:125 → 510
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:129 → 149
    ZF_C2H2; C2H2 Zn finger [structural motif]

RNA

  1. XR_004220411.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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