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sotv exostosin glycosyltransferase sotv [ Ceratina calcarata ]

Gene ID: 108622677, updated on 10-Oct-2024

Summary

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Gene symbol
sotv
Gene description
exostosin glycosyltransferase sotv
Gene type
protein coding
RefSeq status
MODEL
Organism
Ceratina calcarata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Ceratina; Zadontomerus
Orthologs
fruit fly honey bee all
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Genomic context

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See sotv in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM165200v1 (GCF_001652005.1) Unplaced Scaffold NW_017145181.1 (400734..404089, complement)

NW_017145181.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108622703 Neighboring gene ubiquitin domain-containing protein UBFD1-like Neighboring gene exosome complex component MTR3-like Neighboring gene TATA binding protein Neighboring gene MORF-related gene 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017145181 Unplaced Scaffold Reference ASM165200v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ceratina calcarata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM165200v1

Genomic

  1. NW_017145181.1 Reference ASM165200v1

    Range
    400734..404089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018020716.2 → XP_017876205.1  exostosin-2 isoform X1

    UniProtKB/TrEMBL
    A0AAJ7ISI9

  2. XM_026811678.1 → XP_026667479.1  exostosin-2 isoform X2

    UniProtKB/TrEMBL
    A0AAJ7RXE0
    Conserved Domains (2) summary
    pfam03016
    Location:89 → 366
    Exostosin; Exostosin family
    pfam09258
    Location:439 → 585
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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Molecular Biology Databases