U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LCAT lecithin-cholesterol acyltransferase [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 108587667, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
LCAT
Gene description
lecithin-cholesterol acyltransferase
See related
Ensembl:ENSCJAG00000036396
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LCAT in Genome Data Viewer
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 20 NC_071461.1 (22111074..22115855, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 20 NC_048402.1 (23107295..23112340, complement)

Chromosome 20 - NC_071461.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene proteasome 20S subunit beta 10 Neighboring gene solute carrier family 12 member 4 Neighboring gene dipeptidase 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylcholine-sterol O-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
phosphatidylcholine-sterol acyltransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071461.1 Reference mCalJa1.2.pat.X

    Range
    22111074..22115855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002761078.6 → XP_002761124.1  phosphatidylcholine-sterol acyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8I3WUV1
    Related
    ENSCJAP00000029334.2
    Conserved Domains (1) summary
    pfam02450
    Location:83 → 408
    LCAT; Lecithin:cholesterol acyltransferase

  2. XM_035281942.2 → XP_035137833.1  phosphatidylcholine-sterol acyltransferase isoform X3

    Conserved Domains (1) summary
    pfam02450
    Location:11 → 336
    LCAT; Lecithin:cholesterol acyltransferase

  3. XM_008986093.4 → XP_008984341.1  phosphatidylcholine-sterol acyltransferase isoform X2

    Conserved Domains (1) summary
    pfam02450
    Location:47 → 372
    LCAT; Lecithin:cholesterol acyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.