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LOC108563626 aspartyl/asparaginyl beta-hydroxylase [ Nicrophorus vespilloides ]

Gene ID: 108563626, updated on 10-May-2024

Summary

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Gene symbol
LOC108563626
Gene description
aspartyl/asparaginyl beta-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicrophorus vespilloides
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Staphyliniformia; Silphidae; Nicrophorinae; Nicrophorus
Orthologs
fruit fly all
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Genomic context

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See LOC108563626 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Nicve_v1.0 (GCF_001412225.1) Unplaced Scaffold NW_017098938.1 (33398..38325, complement)

NW_017098938.1Genomic Context describing neighboring genes Neighboring gene MyTH4 and RhoGAP_KIAA1688 domain-containing protein RhoGAP93B Neighboring gene transmembrane protein 63 Neighboring gene Hairy/E(spl)-related with YRPW motif

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017098938.1 Unplaced Scaffold Reference Nicve_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicrophorus vespilloides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Nicve_v1.0

Genomic

  1. NW_017098938.1 Reference Nicve_v1.0

    Range
    33398..38325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017922360.1 → XP_017777849.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

  2. XM_017922359.1 → XP_017777848.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases