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CD1D CD1d molecule [ Rhinopithecus bieti (black snub-nosed monkey) ]

Gene ID: 108527586, updated on 1-Aug-2024

Summary

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Gene symbol
CD1D
Gene description
CD1d molecule
See related
Ensembl:ENSRBIG00000043850
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus bieti
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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See CD1D in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM169854v1 (GCF_001698545.1) Unplaced Scaffold NW_016804529.1 (205632..212791, complement)

NW_016804529.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S10 pseudogene Neighboring gene CD1a molecule Neighboring gene RNA polymerase II elongation factor ELL2 pseudogene Neighboring gene uncharacterized LOC108527589 Neighboring gene kirre like nephrin family adhesion molecule 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_016804529.1 Unplaced Scaffold Reference ASM169854v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables exogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
antigen-presenting glycoprotein CD1d

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus bieti Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM169854v1 Primary Assembly

Genomic

  1. NW_016804529.1 Reference ASM169854v1 Primary Assembly

    Range
    205632..212791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017868930.1 → XP_017724419.1  antigen-presenting glycoprotein CD1d isoform X2

    UniProtKB/TrEMBL
    A0A2K6MYV8, A0AAJ7H8P8
    Related
    ENSRBIP00000040932.1, ENSRBIT00000064967.1

  2. XM_017868929.1 → XP_017724418.1  antigen-presenting glycoprotein CD1d isoform X1

    UniProtKB/TrEMBL
    A0AAJ7H8R5
Nucleotide Protein
Heading Accession and Version

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