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LOC108489529 long-chain-alcohol oxidase FAO1-like [ Gossypium arboreum ]

Gene ID: 108489529, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108489529
Gene description
long-chain-alcohol oxidase FAO1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108489529 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 10 NC_069079.1 (95056267..95061901)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 9 NC_030672.1 (48081808..48087351)

Chromosome 10 - NC_069079.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC128282096 Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables long-chain-alcohol oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-chain-alcohol oxidase FAO1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069079.1 Reference ASM2569848v2 Primary Assembly

    Range
    95056267..95061901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017794152.2 → XP_017649641.1  long-chain-alcohol oxidase FAO1-like

    UniProtKB/TrEMBL
    A0A0B0NRL4
    Conserved Domains (4) summary
    COG2303
    Location:238 → 743
    BetA; Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]
    pfam00732
    Location:286 → 507
    GMC_oxred_N; GMC oxidoreductase
    pfam05199
    Location:600 → 734
    GMC_oxred_C; GMC oxidoreductase
    pfam13450
    Location:243 → 273
    NAD_binding_8; NAD(P)-binding Rossmann-like domain
Nucleotide Protein
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