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LOC108489475 conserved oligomeric Golgi complex subunit 5 [ Gossypium arboreum ]

Gene ID: 108489475, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108489475
Gene description
conserved oligomeric Golgi complex subunit 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108489475 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 10 NC_069079.1 (37144107..37148506, complement)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 9 NC_030672.1 (53147732..53152105, complement)

Chromosome 10 - NC_069079.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108487433 Neighboring gene putative disease resistance protein RGA3 Neighboring gene flowering time control protein FPA-like Neighboring gene 3beta-hydroxysteroid-dehydrogenase/decarboxylase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069079.1 Reference ASM2569848v2 Primary Assembly

    Range
    37144107..37148506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017794049.2 → XP_017649538.1  conserved oligomeric Golgi complex subunit 5

    UniProtKB/TrEMBL
    A0A0B0PFT3
    Conserved Domains (1) summary
    pfam10392
    Location:82 → 180
    COG5; Golgi transport complex subunit 5

RNA

  1. XR_001871975.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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