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LOC108486729 tRNA (carboxymethyluridine(34)-5-O)-methyltransferase [ Gossypium arboreum ]

Gene ID: 108486729, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108486729
Gene description
tRNA (carboxymethyluridine(34)-5-O)-methyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108486729 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 6 NC_069075.1 (137092728..137095442, complement)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 8 NC_030671.1 (44903354..44906049, complement)

Chromosome 6 - NC_069075.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like Neighboring gene uncharacterized LOC108484927 Neighboring gene uncharacterized LOC128293976 Neighboring gene uncharacterized LOC128294048

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (carboxymethyluridine(34)-5-O)-methyltransferase
Names
alkylated DNA repair protein alkB homolog 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069075.1 Reference ASM2569848v2 Primary Assembly

    Range
    137092728..137095442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017790929.2 → XP_017646418.1  tRNA (carboxymethyluridine(34)-5-O)-methyltransferase

    UniProtKB/TrEMBL
    A0A0B0NT23
Nucleotide Protein
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