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LOC108484351 probable galacturonosyltransferase-like 1 [ Gossypium arboreum ]

Gene ID: 108484351, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108484351
Gene description
probable galacturonosyltransferase-like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108484351 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 5 NC_069074.1 (17420027..17421723)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 8 NC_030671.1 (15313400..15315157, complement)

Chromosome 5 - NC_069074.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108484368 Neighboring gene pathogenesis-related thaumatin-like protein 3.5 Neighboring gene putative pentatricopeptide repeat-containing protein At1g19290 Neighboring gene protein LYK5-like Neighboring gene protein DA1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069074.1 Reference ASM2569848v2 Primary Assembly

    Range
    17420027..17421723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017788107.2 → XP_017643596.1  probable galacturonosyltransferase-like 1

Nucleotide Protein
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Molecular Biology Databases