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LOC108481007 sucrose synthase [ Gossypium arboreum ]

Gene ID: 108481007, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108481007
Gene description
sucrose synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108481007 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 7 NC_069076.1 (104115774..104120806)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 1 NC_030664.1 (2322660..2327697, complement)

Chromosome 7 - NC_069076.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide phosphatase SAC3-like Neighboring gene uncharacterized LOC128295344 Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene auxin-responsive protein SAUR76-like Neighboring gene protein SMALL AUXIN UP-REGULATED RNA 10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analyses of the sucrose synthase gene family in cotton: structure, phylogeny and expression patterns. Chen A, et al. BMC Plant Biol, 2012 Jun 13. PMID 22694895, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase
Names
putative sucrose synthase 2
sucrose synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069076.1 Reference ASM2569848v2 Primary Assembly

    Range
    104115774..104120806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017784171.2 → XP_017639660.1  sucrose synthase

    UniProtKB/TrEMBL
    I6QYQ8
Nucleotide Protein
Heading Accession and Version

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