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LOC108480706 laccase-4-like [ Gossypium arboreum ]

Gene ID: 108480706, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108480706
Gene description
laccase-4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108480706 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 4 NC_069073.1 (108400386..108402839)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 7 NC_030670.1 (27437727..27440152, complement)

Chromosome 4 - NC_069073.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128291787 Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069073.1 Reference ASM2569848v2 Primary Assembly

    Range
    108400386..108402839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017783783.2 → XP_017639272.1  laccase-4-like

    UniProtKB/TrEMBL
    A0A0B0P460
    Conserved Domains (4) summary
    cd13849
    Location:26 → 142
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:157 → 303
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:402 → 539
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:21 → 556
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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