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LOC108478621 probable pectinesterase 53 [ Gossypium arboreum ]

Gene ID: 108478621, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108478621
Gene description
probable pectinesterase 53
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108478621 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 12 NC_069081.1 (94094654..94096583)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 6 NC_030669.1 (61782720..61784500)

Chromosome 12 - NC_069081.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108477789 Neighboring gene transcription factor MYB108-like Neighboring gene gibberellin 2-beta-dioxygenase 2-like Neighboring gene uncharacterized LOC128285609

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectinesterase 53

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069081.1 Reference ASM2569848v2 Primary Assembly

    Range
    94094654..94096583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017781091.2 → XP_017636580.1  probable pectinesterase 53 isoform X1

    UniProtKB/TrEMBL
    A0A0B0NED4
    Conserved Domains (2) summary
    PLN02665
    Location:5 → 377
    PLN02665; pectinesterase family protein
    cl01911
    Location:2 → 376
    Pectinesterase; Pectinesterase

  2. XM_017781092.2 → XP_017636581.1  probable pectinesterase 53 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases