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LOC108476056 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic-like [ Gossypium arboreum ]

Gene ID: 108476056, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108476056
Gene description
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108476056 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 3 NC_069072.1 (107525299..107531598)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 5 NC_030668.1 (54514720..54520986)

Chromosome 3 - NC_069072.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128290456 Neighboring gene small nuclear ribonucleoprotein SmD3b Neighboring gene dolichol-phosphate mannosyltransferase subunit 1 Neighboring gene uncharacterized LOC108475506

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069072.1 Reference ASM2569848v2 Primary Assembly

    Range
    107525299..107531598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017778123.2 → XP_017633612.1  1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic-like isoform X2

  2. XM_017778122.2 → XP_017633611.1  1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic-like isoform X1

    UniProtKB/TrEMBL
    A0A0B0MJW8
    Conserved Domains (4) summary
    cd02854
    Location:143 → 239
    E_set_GBE_euk_N; N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)
    cd11321
    Location:243 → 651
    AmyAc_bac_euk_BE; Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes
    PLN02447
    Location:36 → 784
    PLN02447; 1,4-alpha-glucan-branching enzyme
    pfam02806
    Location:670 → 772
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
Nucleotide Protein
Heading Accession and Version

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