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LOC108474024 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [ Gossypium arboreum ]

Gene ID: 108474024, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108474024
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108474024 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 11 NC_069080.1 (137238621..137247920, complement)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 4 NC_030667.1 (130159554..130168070)

Chromosome 11 - NC_069080.1Genomic Context describing neighboring genes Neighboring gene NDR1/HIN1-like protein 1 Neighboring gene mRNA-decapping enzyme-like protein Neighboring gene casparian strip membrane protein 1-like Neighboring gene small nucleolar RNA Z266 Neighboring gene probable endo-1,3(4)-beta-glucanase ARB_01444 Neighboring gene ubiquitin-like Neighboring gene cell division protein FtsZ homolog 2-2, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069080.1 Reference ASM2569848v2 Primary Assembly

    Range
    137238621..137247920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017775895.2 → XP_017631384.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    UniProtKB/TrEMBL
    A0A0B0MSN9
    Conserved Domains (6) summary
    COG0457
    Location:100 → 393
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:156 → 184
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:224 → 257
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:367 → 432
    TPR_11; TPR repeat
    pfam13432
    Location:51 → 115
    TPR_16; Tetratricopeptide repeat
    cl10013
    Location:486 → 844
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
Nucleotide Protein
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