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LOC108469995 polygalacturonate 4-alpha-galacturonosyltransferase-like [ Gossypium arboreum ]

Gene ID: 108469995, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108469995
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108469995 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 8 NC_069077.1 (25600406..25604782)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 3 NC_030666.1 (94467107..94471222, complement)

Chromosome 8 - NC_069077.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like Neighboring gene BEACH domain-containing protein C2-like Neighboring gene uncharacterized LOC128296595

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069077.1 Reference ASM2569848v2 Primary Assembly

    Range
    25600406..25604782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017771163.2 → XP_017626652.1  polygalacturonate 4-alpha-galacturonosyltransferase-like

    UniProtKB/TrEMBL
    A0A0B0NRJ7
    Conserved Domains (2) summary
    cd06429
    Location:363 → 659
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02910
    Location:81 → 672
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
Nucleotide Protein
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