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LOC108469840 endoglucanase 6-like [ Gossypium arboreum ]

Gene ID: 108469840, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108469840
Gene description
endoglucanase 6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108469840 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 8 NC_069077.1 (44524398..44529288)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 3 NC_030666.1 (43342698..43347217)

Chromosome 8 - NC_069077.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene RING-H2 finger protein ATL20-like Neighboring gene uncharacterized LOC108471679

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoglucanase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069077.1 Reference ASM2569848v2 Primary Assembly

    Range
    44524398..44529288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017770901.2 → XP_017626390.1  endoglucanase 6-like

    UniProtKB/TrEMBL
    A0A0B0NRA7
    Conserved Domains (3) summary
    PLN02171
    Location:3 → 628
    PLN02171; endoglucanase
    pfam09478
    Location:536 → 614
    CBM49; Carbohydrate binding domain CBM49
    cl02959
    Location:29 → 492
    Glyco_hydro_9; Glycosyl hydrolase family 9
Nucleotide Protein
Heading Accession and Version

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