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LOC108468843 xyloglucan endotransglucosylase/hydrolase protein 22-like [ Gossypium arboreum ]

Gene ID: 108468843, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108468843
Gene description
xyloglucan endotransglucosylase/hydrolase protein 22-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108468843 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 8 NC_069077.1 (139431788..139433159)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 3 NC_030666.1 (52367767..52369042, complement)

Chromosome 8 - NC_069077.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108468559 Neighboring gene uncharacterized LOC128296564 Neighboring gene probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic Neighboring gene zinc finger protein CONSTANS-LIKE 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan endotransglucosylase/hydrolase protein 22-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069077.1 Reference ASM2569848v2 Primary Assembly

    Range
    139431788..139433159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017769702.2 → XP_017625191.1  xyloglucan endotransglucosylase/hydrolase protein 22-like

    UniProtKB/TrEMBL
    A0A0B0N0Q1, A0A0B0PE25
    Conserved Domains (2) summary
    PLN03161
    Location:20 → 280
    PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
    cd02176
    Location:17 → 277
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version

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