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LOC108467907 hydroxyproline O-galactosyltransferase HPGT3 [ Gossypium arboreum ]

Gene ID: 108467907, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108467907
Gene description
hydroxyproline O-galactosyltransferase HPGT3
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108467907 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 8 NC_069077.1 (197642..201321, complement)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 3 NC_030666.1 (21923442..21927052, complement)

Chromosome 8 - NC_069077.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128296457 Neighboring gene uncharacterized LOC108468890 Neighboring gene heparanase-like protein 3 Neighboring gene probable sucrose-phosphate synthase 1 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation. Tuttle JR, et al. BMC Genomics, 2015 Jun 27. PMID 26116072, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069077.1 Reference ASM2569848v2 Primary Assembly

    Range
    197642..201321 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017768725.2 → XP_017624214.1  hydroxyproline O-galactosyltransferase HPGT3 isoform X1

  2. XM_053018394.1 → XP_052874354.1  hydroxyproline O-galactosyltransferase HPGT3 isoform X2

Nucleotide Protein
Heading Accession and Version

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