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LOC108466956 rhamnogalacturonan I rhamnosyltransferase 1 [ Gossypium arboreum ]

Gene ID: 108466956, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108466956
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108466956 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 7 NC_069076.1 (17791206..17794849)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 1 NC_030664.1 (95068605..95072333)

Chromosome 7 - NC_069076.1Genomic Context describing neighboring genes Neighboring gene auxin transport protein BIG Neighboring gene uncharacterized LOC128295531 Neighboring gene uncharacterized LOC108456564 Neighboring gene uncharacterized LOC108470289

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069076.1 Reference ASM2569848v2 Primary Assembly

    Range
    17791206..17794849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017767401.2 → XP_017622890.1  rhamnogalacturonan I rhamnosyltransferase 1

    UniProtKB/TrEMBL
    A0A0B0NFU6
    Conserved Domains (2) summary
    cd11299
    Location:115 → 440
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    pfam10250
    Location:118 → 441
    O-FucT; GDP-fucose protein O-fucosyltransferase
Nucleotide Protein
Heading Accession and Version

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