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LOC108466049 sucrose synthase-like [ Gossypium arboreum ]

Gene ID: 108466049, updated on 10-Oct-2024

Summary

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Gene symbol
LOC108466049
Gene description
sucrose synthase-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108466049 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 6 NC_069075.1 (119103426..119107932)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) Unplaced Scaffold NW_016681785.1 (406242..410684, complement)

Chromosome 6 - NC_069075.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene auxin-responsive protein SAUR76-like Neighboring gene mannosyltransferase APTG1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analyses of the sucrose synthase gene family in cotton: structure, phylogeny and expression patterns. Chen A, et al. BMC Plant Biol, 2012 Jun 13. PMID 22694895, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase-like
Names
putative sucrose synthase 4
sucrose synthase 4
sucrose synthase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001330029.1 → NP_001316958.1  sucrose synthase-like

    Status: PROVISIONAL

    Source sequence(s)
    JQ995525
    UniProtKB/TrEMBL
    A0A0B0MNU0, G9BRX8
    Conserved Domains (3) summary
    PLN00142
    Location:1 → 806
    PLN00142; sucrose synthase
    pfam00534
    Location:569 → 746
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:16 → 553
    Sucrose_synth; Sucrose synthase

RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069075.1 Reference ASM2569848v2 Primary Assembly

    Range
    119103426..119107932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053029194.1 → XP_052885154.1  sucrose synthase-like isoform X3

    UniProtKB/TrEMBL
    G9BRX9

  2. XM_017766417.2 → XP_017621906.1  sucrose synthase-like isoform X3

    UniProtKB/TrEMBL
    A0A0B0MNU0, G9BRX9
    Conserved Domains (3) summary
    PLN00142
    Location:1 → 833
    PLN00142; sucrose synthase
    pfam00534
    Location:596 → 773
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:16 → 580
    Sucrose_synth; Sucrose synthase

  3. XM_053029192.1 → XP_052885152.1  sucrose synthase-like isoform X1

  4. XM_053029195.1 → XP_052885155.1  sucrose synthase-like isoform X4

  5. XM_053029193.1 → XP_052885153.1  sucrose synthase-like isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases