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LOC108465866 UDP-arabinopyranose mutase 1 [ Gossypium arboreum ]

Gene ID: 108465866, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108465866
Gene description
UDP-arabinopyranose mutase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108465866 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 7 NC_069076.1 (93505326..93507924)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) Unplaced Scaffold NW_016657115.1 (29..2437, complement)

Chromosome 7 - NC_069076.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 85A Neighboring gene uncharacterized LOC128295323 Neighboring gene MYB-like transcription factor EOBI Neighboring gene transfer RNA isoleucine (anticodon AAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-arabinopyranose mutase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069076.1 Reference ASM2569848v2 Primary Assembly

    Range
    93505326..93507924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017766255.2 → XP_017621744.1  UDP-arabinopyranose mutase 1

    UniProtKB/TrEMBL
    A0A0B0MLE3, A0A0B0N5V4
    Conserved Domains (1) summary
    PLN03180
    Location:16 → 354
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
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