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LOC108462790 sulfoquinovosyl transferase SQD2-like [ Gossypium arboreum ]

Gene ID: 108462790, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108462790
Gene description
sulfoquinovosyl transferase SQD2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108462790 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 2 NC_069071.1 (114617791..114621925, complement)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 2 NC_030665.1 (69996886..70000913, complement)

Chromosome 2 - NC_069071.1Genomic Context describing neighboring genes Neighboring gene laccase-4 Neighboring gene transcription factor DIVARICATA-like Neighboring gene josephin-like protein Neighboring gene mediator of RNA polymerase II transcription subunit 6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfoquinovosyl transferase SQD2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069071.1 Reference ASM2569848v2 Primary Assembly

    Range
    114617791..114621925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017762697.2 → XP_017618186.1  sulfoquinovosyl transferase SQD2-like

    UniProtKB/TrEMBL
    A0A0B0N8I7
    Conserved Domains (1) summary
    PLN02871
    Location:79 → 515
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Nucleotide Protein
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