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LOC108461372 probable beta-1,4-xylosyltransferase IRX10 [ Gossypium arboreum ]

Gene ID: 108461372, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108461372
Gene description
probable beta-1,4-xylosyltransferase IRX10
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108461372 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 3 NC_069072.1 (8572903..8575247)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 13 NC_030676.1 (21847820..21850171, complement)

Chromosome 3 - NC_069072.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC128290482 Neighboring gene sterol 14-demethylase-like Neighboring gene protein NRT1/ PTR FAMILY 6.1 Neighboring gene uncharacterized LOC128290251

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069072.1 Reference ASM2569848v2 Primary Assembly

    Range
    8572903..8575247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017761205.2 → XP_017616694.1  probable beta-1,4-xylosyltransferase IRX10

    UniProtKB/TrEMBL
    A0A0B0PLN4
    Conserved Domains (1) summary
    pfam03016
    Location:45 → 340
    Exostosin; Exostosin family
Nucleotide Protein
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