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LOC108457159 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like [ Gossypium arboreum ]

Gene ID: 108457159, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108457159
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108457159 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 9 NC_069078.1 (65544524..65551662, complement)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 11 NC_030674.1 (71359160..71366240, complement)

Chromosome 9 - NC_069078.1Genomic Context describing neighboring genes Neighboring gene alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like Neighboring gene pentatricopeptide repeat-containing protein At5g46460, mitochondrial-like Neighboring gene alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like Neighboring gene pentatricopeptide repeat-containing protein At5g46460, mitochondrial Neighboring gene nuclear pore complex protein NUP107 Neighboring gene uncharacterized LOC108454699

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069078.1 Reference ASM2569848v2 Primary Assembly

    Range
    65544524..65551662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017756049.2 → XP_017611538.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X2

    UniProtKB/TrEMBL
    A0A0B0PAF8

  2. XM_017756045.2 → XP_017611534.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1

    UniProtKB/TrEMBL
    A0A0B0PAF8
Nucleotide Protein
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