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LOC108454904 uncharacterized LOC108454904 [ Gossypium arboreum ]

Gene ID: 108454904, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108454904
Gene description
uncharacterized LOC108454904
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108454904 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 9 NC_069078.1 (11411069..11414023, complement)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 11 NC_030674.1 (101570281..101573142)

Chromosome 9 - NC_069078.1Genomic Context describing neighboring genes Neighboring gene SUPPRESSOR OF GAMMA RESPONSE 1-like Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene glucuronokinase 1-like Neighboring gene E3 ubiquitin-protein ligase RGLG2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC108454904

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069078.1 Reference ASM2569848v2 Primary Assembly

    Range
    11411069..11414023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017753528.2 → XP_017609017.1  uncharacterized protein LOC108454904 isoform X2

  2. XM_017753527.2 → XP_017609016.1  uncharacterized protein LOC108454904 isoform X1

    UniProtKB/TrEMBL
    A0A0B0PAB9
    Conserved Domains (1) summary
    pfam04724
    Location:38 → 385
    Glyco_transf_17; Glycosyltransferase family 17
Nucleotide Protein
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