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LOC108454865 starch synthase 1, chloroplastic/amyloplastic [ Gossypium arboreum ]

Gene ID: 108454865, updated on 18-Sep-2024

Summary

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Gene symbol
LOC108454865
Gene description
starch synthase 1, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium arboreum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC108454865 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 9 NC_069078.1 (83098449..83103782)
100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 11 NC_030674.1 (62988088..62993275)

Chromosome 9 - NC_069078.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase SINAT5-like Neighboring gene CLP protease regulatory subunit CLPX1, mitochondrial-like Neighboring gene protein ABIL2-like Neighboring gene uncharacterized LOC108455776

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569848v2 Primary Assembly

Genomic

  1. NC_069078.1 Reference ASM2569848v2 Primary Assembly

    Range
    83098449..83103782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017753467.2 → XP_017608956.1  starch synthase 1, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A0B0PCE0
    Conserved Domains (2) summary
    cd03791
    Location:147 → 647
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:147 → 646
    glgA; glycogen/starch synthase, ADP-glucose type
Nucleotide Protein
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