U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

aarsd1 alanyl-tRNA synthetase domain containing 1 [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108443260, updated on 18-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
aarsd1
Gene description
alanyl-tRNA synthetase domain containing 1
See related
Ensembl:ENSPNAG00000000407
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See aarsd1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 13 NC_051223.1 (2407668..2418009)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016244292.1 (314282..324775)

Chromosome 13 - NC_051223.1Genomic Context describing neighboring genes Neighboring gene N-acylsphingosine amidohydrolase 2 Neighboring gene sphingomyelin synthase 1b Neighboring gene glucose-6-phosphatase catalytic subunit 1a, tandem duplicate 2 Neighboring gene glucose-6-phosphatase-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Ser-tRNA(Ala) hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of translational fidelity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alanyl-tRNA editing protein Aarsd1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051223.1 Reference fPygNat1.pri

    Range
    2407668..2418009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017723810.2 → XP_017579299.2  alanyl-tRNA editing protein Aarsd1

    UniProtKB/TrEMBL
    A0A3B4BQL1
    Related
    ENSPNAP00000055638.1, ENSPNAT00000047058.1
    Conserved Domains (1) summary
    COG2872
    Location:8 → 248
    AlaX; Ser-tRNA(Ala) deacylase AlaX (editing enzyme) [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.