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LOC108425729 R3H domain-containing protein 1 [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108425729, updated on 12-Sep-2024

Summary

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Gene symbol
LOC108425729
Gene description
R3H domain-containing protein 1
See related
Ensembl:ENSPNAG00000013952
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Orthologs
human zebrafish all
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Genomic context

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See LOC108425729 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
28
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 25 NC_051235.1 (8565139..8636407, complement)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243789.1 (458001..529117, complement)

Chromosome 25 - NC_051235.1Genomic Context describing neighboring genes Neighboring gene Rho family GTPase 3a Neighboring gene RNA-binding protein 43-like Neighboring gene zinc finger, RAN-binding domain containing 3 Neighboring gene cyclin T2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
R3H domain-containing protein 1; R3H domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051235.1 Reference fPygNat1.pri

    Range
    8565139..8636407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037534618.1 → XP_037390515.1  R3H domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4CAP5
    Related
    ENSPNAP00000054678.1, ENSPNAT00000085889.1
    Conserved Domains (3) summary
    cd02642
    Location:186 → 247
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:630 → 914
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:270 → 320
    SUZ; SUZ domain

  2. XM_037534615.1 → XP_037390512.1  R3H domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4CAP5
    Conserved Domains (3) summary
    cd02642
    Location:186 → 247
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:630 → 914
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:270 → 320
    SUZ; SUZ domain

  3. XM_037534616.1 → XP_037390513.1  R3H domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4CAP5
    Conserved Domains (3) summary
    cd02642
    Location:186 → 247
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:630 → 914
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:270 → 320
    SUZ; SUZ domain

  4. XM_037534617.1 → XP_037390514.1  R3H domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4CAP5
    Conserved Domains (3) summary
    cd02642
    Location:186 → 247
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:630 → 914
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:270 → 320
    SUZ; SUZ domain

  5. XM_037534622.1 → XP_037390519.1  R3H domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A3B4CBP0
    Related
    ENSPNAP00000008306.1, ENSPNAT00000000360.2
    Conserved Domains (3) summary
    cd02642
    Location:143 → 204
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:587 → 871
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:227 → 277
    SUZ; SUZ domain

  6. XM_037534621.1 → XP_037390518.1  R3H domain-containing protein 1 isoform X4

    Conserved Domains (3) summary
    cd02642
    Location:156 → 217
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:600 → 884
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:240 → 290
    SUZ; SUZ domain

  7. XM_037534624.1 → XP_037390521.1  R3H domain-containing protein 2 isoform X7

    Related
    ENSPNAP00000051000.1, ENSPNAT00000043042.1
    Conserved Domains (3) summary
    cd02642
    Location:186 → 247
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:508 → 792
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:270 → 320
    SUZ; SUZ domain

  8. XM_037534623.1 → XP_037390520.1  R3H domain-containing protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A3B4C8P5
    Related
    ENSPNAP00000008297.1, ENSPNAT00000000382.2
    Conserved Domains (3) summary
    cd02642
    Location:186 → 247
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:536 → 820
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:270 → 320
    SUZ; SUZ domain

  9. XM_037534620.1 → XP_037390517.1  R3H domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3B4DZ20
    Related
    ENSPNAP00000028311.1, ENSPNAT00000000326.2
    Conserved Domains (3) summary
    cd02642
    Location:186 → 247
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:602 → 886
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:270 → 320
    SUZ; SUZ domain

  10. XM_037534619.1 → XP_037390516.1  R3H domain-containing protein 1 isoform X2

    Conserved Domains (3) summary
    cd02642
    Location:186 → 247
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:629 → 913
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:270 → 320
    SUZ; SUZ domain

  11. XM_037534614.1 → XP_037390511.1  R3H domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4CAP5
    Related
    ENSPNAP00000008335.1, ENSPNAT00000000310.2
    Conserved Domains (3) summary
    cd02642
    Location:186 → 247
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam09606
    Location:630 → 914
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam12752
    Location:270 → 320
    SUZ; SUZ domain
Nucleotide Protein
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