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atxn1a ataxin 1a [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108425212, updated on 18-Jun-2024

Summary

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Gene symbol
atxn1a
Gene description
ataxin 1a
See related
Ensembl:ENSPNAG00000010587
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Also known as
atxn1
Orthologs
human zebrafish all
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Genomic context

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See atxn1a in Genome Data Viewer
Location:
chromosome: 27
Exon count:
6
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 27 NC_051237.1 (5026755..5150748, complement)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243756.1 (2710594..2834427, complement)

Chromosome 27 - NC_051237.1Genomic Context describing neighboring genes Neighboring gene alpha-L-fucosidase 1, tandem duplicate 2 Neighboring gene guanosine monophosphate reductase Neighboring gene U2 spliceosomal RNA Neighboring gene family with sequence similarity 8 member A1a Neighboring gene fatty acid binding protein 4a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-1a
Names
ataxin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051237.1 Reference fPygNat1.pri

    Range
    5026755..5150748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017693711.2 → XP_017549200.1  ataxin-1a

    UniProtKB/TrEMBL
    A0A3B4C018
    Related
    ENSPNAP00000004146.1, ENSPNAT00000007512.2
    Conserved Domains (3) summary
    PRK10263
    Location:90 → 247
    PRK10263; DNA translocase FtsK; Provisional
    pfam08517
    Location:527 → 638
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:346 → 399
    ATXN-1_C; Capicua transcriptional repressor modulator

  2. XM_037535371.1 → XP_037391268.1  ataxin-1a

    UniProtKB/TrEMBL
    A0A3B4C018
    Conserved Domains (3) summary
    PRK10263
    Location:90 → 247
    PRK10263; DNA translocase FtsK; Provisional
    pfam08517
    Location:527 → 638
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:346 → 399
    ATXN-1_C; Capicua transcriptional repressor modulator

  3. XM_017693720.2 → XP_017549209.1  ataxin-1a

    UniProtKB/TrEMBL
    A0A3B4C018
    Conserved Domains (3) summary
    PRK10263
    Location:90 → 247
    PRK10263; DNA translocase FtsK; Provisional
    pfam08517
    Location:527 → 638
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:346 → 399
    ATXN-1_C; Capicua transcriptional repressor modulator
Nucleotide Protein
Heading Accession and Version

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