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tbl3 transducin beta like 3 [ Pygocentrus nattereri (red-bellied piranha) ]

Gene ID: 108412677, updated on 18-Jun-2024

Summary

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Gene symbol
tbl3
Gene description
transducin beta like 3
See related
Ensembl:ENSPNAG00000017527
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygocentrus nattereri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Pygocentrus
Orthologs
human zebrafish all
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Genomic context

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See tbl3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
23
Annotation release Status Assembly Chr Location
101 current fPygNat1.pri (GCF_015220715.1) 14 NC_051224.1 (9268655..9291708)
100 previous assembly Pygocentrus_nattereri-1.0.2 (GCF_001682695.1) Unplaced Scaffold NW_016243767.1 (178105..200475)

Chromosome 14 - NC_051224.1Genomic Context describing neighboring genes Neighboring gene myosin-4-like Neighboring gene synthesis of cytochrome C oxidase 1 Neighboring gene NADPH oxidase organizer 1a Neighboring gene GID complex subunit 4 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transducin beta-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygocentrus nattereri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPygNat1.pri

Genomic

  1. NC_051224.1 Reference fPygNat1.pri

    Range
    9268655..9291708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017684810.2 → XP_017540299.2  transducin beta-like protein 3

    UniProtKB/TrEMBL
    A0A3B4CMJ7
    Related
    ENSPNAP00000011779.2, ENSPNAT00000018860.2
    Conserved Domains (3) summary
    cd00200
    Location:336 → 638
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:388 → 428
    7WD40; WD40 repeat [structural motif]
    pfam08625
    Location:660 → 793
    Utp13; Utp13 specific WD40 associated domain
Nucleotide Protein
Heading Accession and Version

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