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CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108409008, updated on 14-Mar-2024

Summary

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Gene symbol
CACNA2D1
Gene description
calcium voltage-gated channel auxiliary subunit alpha2delta 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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See CACNA2D1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436068.1 (11334414..11857452)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016546074.1 (82468..200983, complement)

NW_023436068.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S16-like Neighboring gene semaphorin 3E Neighboring gene piccolo presynaptic cytomatrix protein Neighboring gene EP300-interacting inhibitor of differentiation 2-like Neighboring gene phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2-like Neighboring gene EP300-interacting inhibitor of differentiation 2-like Neighboring gene uncharacterized LOC118972974 Neighboring gene uncharacterized LOC118972975 Neighboring gene hepatocyte growth factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of L-type voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent calcium channel subunit alpha-2/delta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436068.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    11334414..11857452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037021449.1 → XP_036877344.1  voltage-dependent calcium channel subunit alpha-2/delta-1

    Conserved Domains (4) summary
    cd01463
    Location:197 → 375
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    pfam02743
    Location:383 → 488
    dCache_1; Cache domain
    pfam08399
    Location:104 → 184
    VWA_N; VWA N-terminal
    pfam08473
    Location:603 → 1030
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd
Nucleotide Protein
Heading Accession and Version

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