U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108406542, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TMTC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436101.1 (9645258..9703244)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016542081.1 (36248..95441)

NW_023436101.1Genomic Context describing neighboring genes Neighboring gene integrin subunit beta like 1 Neighboring gene sodium leak channel, non-selective Neighboring gene uncharacterized LOC118973636 Neighboring gene U6 spliceosomal RNA Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene propionyl-CoA carboxylase subunit alpha

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein O-mannosyl-transferase TMTC4
Names
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436101.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    9645258..9703244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037024889.1 → XP_036880784.1  protein O-mannosyl-transferase TMTC4 isoform X1

    Conserved Domains (3) summary
    COG0457
    Location:547 → 766
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:579 → 607
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:391 → 463
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_037024890.1 → XP_036880785.1  protein O-mannosyl-transferase TMTC4 isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:449 → 712
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:481 → 509
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:293 → 365
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.