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HADH hydroxyacyl-CoA dehydrogenase [ Manis javanica (Malayan pangolin) ]

Gene ID: 108405594, updated on 14-Mar-2024

Summary

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Gene symbol
HADH
Gene description
hydroxyacyl-CoA dehydrogenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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See HADH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436046.1 (1289282..1350692, complement)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016540773.1 (307234..341343, complement)

NW_023436046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118972717 Neighboring gene lymphoid enhancer binding factor 1 Neighboring gene uncharacterized LOC118972719 Neighboring gene cytochrome P450 2U1 Neighboring gene sphingomyelin synthase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyacyl-coenzyme A dehydrogenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436046.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    1289282..1350692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037020148.1 → XP_036876043.1  hydroxyacyl-coenzyme A dehydrogenase, mitochondrial

    Conserved Domains (1) summary
    COG1250
    Location:27 → 312
    FadB; 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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