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CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108403396, updated on 14-Mar-2024

Summary

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Gene symbol
CSGALNACT1
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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See CSGALNACT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023435996.1 (2031148..2353950)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016538200.1 (107562..145188, complement)

NW_023435996.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 9 Neighboring gene ADAM metallopeptidase domain 32 Neighboring gene uncharacterized LOC118971787 Neighboring gene uncharacterized LOC118971788 Neighboring gene SH2 domain containing 4A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023435996.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    2031148..2353950
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037015017.1 → XP_036870912.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cl11394
    Location:66 → 503
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_037015020.1 → XP_036870915.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cl11394
    Location:66 → 503
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_037015016.1 → XP_036870911.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cl11394
    Location:66 → 503
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_037015022.1 → XP_036870917.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X2

    Conserved Domains (1) summary
    cl11394
    Location:66 → 409
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_037015018.1 → XP_036870913.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cl11394
    Location:66 → 503
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  6. XM_037015019.1 → XP_036870914.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cl11394
    Location:66 → 503
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  7. XM_037015021.1 → XP_036870916.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cl11394
    Location:66 → 503
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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