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ATRN attractin [ Manis javanica (Malayan pangolin) ]

Gene ID: 108396277, updated on 14-Mar-2024

Summary

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Gene symbol
ATRN
Gene description
attractin
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human mouse all
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Genomic context

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See ATRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436019.1 (7184388..7353334)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016532460.1 (12289..109706, complement)

NW_023436019.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal assembly factor 9 Neighboring gene ferritin heavy chain-like Neighboring gene translationally-controlled tumor protein-like Neighboring gene uncharacterized LOC118972261 Neighboring gene GDNF family receptor alpha 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436019.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    7184388..7353334
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037017369.1 → XP_036873264.1  attractin isoform X1

    Conserved Domains (7) summary
    PHA03098
    Location:311 → 473
    PHA03098; kelch-like protein; Provisional
    PRK14131
    Location:521 → 617
    PRK14131; N-acetylneuraminate epimerase
    cd00041
    Location:116 → 231
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1046 → 1091
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:538 → 593
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:916 → 967
    PSI; Plexin repeat
    cl02432
    Location:772 → 904
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_037017370.1 → XP_036873265.1  attractin isoform X2

    Conserved Domains (7) summary
    PHA03098
    Location:311 → 473
    PHA03098; kelch-like protein; Provisional
    PRK14131
    Location:521 → 617
    PRK14131; N-acetylneuraminate epimerase
    cd00041
    Location:116 → 231
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1046 → 1091
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:538 → 593
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:916 → 967
    PSI; Plexin repeat
    cl02432
    Location:772 → 904
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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