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CHST6 carbohydrate sulfotransferase 6 [ Manis javanica (Malayan pangolin) ]

Gene ID: 108387438, updated on 14-Mar-2024

Summary

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Gene symbol
CHST6
Gene description
carbohydrate sulfotransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Manis javanica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
Orthologs
human all
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Genomic context

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See CHST6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023436143.1 (10850349..10883505)
100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016566719.1 (19430..47557)

NW_023436143.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118967531 Neighboring gene adenosine deaminase tRNA specific 1 Neighboring gene GABA type A receptor associated protein like 2 Neighboring gene transmembrane protein 231 Neighboring gene transmembrane protein 170A Neighboring gene craniofacial development protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YNU_ManJav_2.0 Primary Assembly

Genomic

  1. NW_023436143.1 Reference YNU_ManJav_2.0 Primary Assembly

    Range
    10850349..10883505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017645697.2 → XP_017501186.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  2. XM_036993842.1 → XP_036849737.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  3. XM_017645696.2 → XP_017501185.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family

  4. XM_036993841.1 → XP_036849736.1  carbohydrate sulfotransferase 6

    Conserved Domains (1) summary
    cl21551
    Location:43 → 297
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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