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LOC108346039 hydroxyproline O-galactosyltransferase GALT6 [ Vigna angularis (adzuki bean) ]

Gene ID: 108346039, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108346039
Gene description
hydroxyproline O-galactosyltransferase GALT6
Locus tag
HKW66_Vig0173150
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108346039 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 10 NC_068979.1 (22847448..22852181)
100 previous assembly Vigan1.1 (GCF_001190045.1) 10 NC_030646.1 (32764589..32769265)

Chromosome 10 - NC_068979.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene wall-associated receptor kinase-like 20 Neighboring gene transfer RNA glycine (anticodon GCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068979.1 Reference ASM1680809v1 Primary Assembly

    Range
    22847448..22852181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017584968.2 → XP_017440457.1  hydroxyproline O-galactosyltransferase GALT6 isoform X1

    UniProtKB/TrEMBL
    A0A0L9VMR0, A0A0S3T2F0
    Conserved Domains (1) summary
    PLN03133
    Location:139 → 643
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  2. XM_052869753.1 → XP_052725713.1  hydroxyproline O-galactosyltransferase GALT6 isoform X1

    UniProtKB/TrEMBL
    A0A0L9VMR0, A0A0S3T2F0

  3. XM_052869754.1 → XP_052725714.1  hydroxyproline O-galactosyltransferase GALT6 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases