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LOC108345608 granule-bound starch synthase 2, chloroplastic/amyloplastic [ Vigna angularis (adzuki bean) ]

Gene ID: 108345608, updated on 10-Oct-2024

Summary

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Gene symbol
LOC108345608
Gene description
granule-bound starch synthase 2, chloroplastic/amyloplastic
Locus tag
HKW66_Vig0152080
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108345608 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 8 NC_068977.1 (5125213..5135067)
100 previous assembly Vigan1.1 (GCF_001190045.1) 10 NC_030646.1 (36366519..36376376, complement)

Chromosome 8 - NC_068977.1Genomic Context describing neighboring genes Neighboring gene TMV resistance protein N Neighboring gene structural maintenance of chromosomes protein 4 Neighboring gene uncharacterized LOC128193499 Neighboring gene uncharacterized protein At5g19025 Neighboring gene uncharacterized LOC128193817

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 2, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068977.1 Reference ASM1680809v1 Primary Assembly

    Range
    5125213..5135067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052867074.1 → XP_052723034.1  granule-bound starch synthase 2, chloroplastic/amyloplastic isoform X1

  2. XM_017584229.2 → XP_017439718.1  granule-bound starch synthase 2, chloroplastic/amyloplastic isoform X2

    UniProtKB/TrEMBL
    A0A0L9VNK7, A0A0S3T8D3
    Conserved Domains (3) summary
    cd03791
    Location:300 → 783
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:299 → 786
    glgA; glycogen/starch synthase, ADP-glucose type
    cl00230
    Location:93 → 161
    Cis_IPPS; Cis (Z)-Isoprenyl Diphosphate Synthases
Nucleotide Protein
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