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LOC108342919 mannosylglycoprotein endo-beta-mannosidase [ Vigna angularis (adzuki bean) ]

Gene ID: 108342919, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108342919
Gene description
mannosylglycoprotein endo-beta-mannosidase
Locus tag
HKW66_Vig0074680
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108342919 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 6 NC_068975.1 (25820245..25826625)
100 previous assembly Vigan1.1 (GCF_001190045.1) 9 NC_030645.1 (20253299..20259694)

Chromosome 6 - NC_068975.1Genomic Context describing neighboring genes Neighboring gene cyclin-P3-1-like Neighboring gene putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 Neighboring gene heavy metal-associated isoprenylated plant protein 34 Neighboring gene uncharacterized LOC128197353

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannosylglycoprotein endo-beta-mannosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068975.1 Reference ASM1680809v1 Primary Assembly

    Range
    25820245..25826625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052878817.1 → XP_052734777.1  mannosylglycoprotein endo-beta-mannosidase isoform X3

  2. XM_052878816.1 → XP_052734776.1  mannosylglycoprotein endo-beta-mannosidase isoform X2

  3. XM_017580826.2 → XP_017436315.1  mannosylglycoprotein endo-beta-mannosidase isoform X1

    UniProtKB/TrEMBL
    A0A0L9VD69, A0A0S3S5E4
    Conserved Domains (2) summary
    cl30613
    Location:47 → 688
    LacZ; Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
    cl38983
    Location:893 → 961
    Ig_mannosidase; Ig-fold domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases