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LOC108339516 probable glucuronoxylan glucuronosyltransferase IRX7 [ Vigna angularis (adzuki bean) ]

Gene ID: 108339516, updated on 10-Oct-2024

Summary

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Gene symbol
LOC108339516
Gene description
probable glucuronoxylan glucuronosyltransferase IRX7
Locus tag
HKW66_Vig0142330
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108339516 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 5 NC_068974.1 (33264693..33267302)
100 previous assembly Vigan1.1 (GCF_001190045.1) 8 NC_030644.1 (24474142..24476774)

Chromosome 5 - NC_068974.1Genomic Context describing neighboring genes Neighboring gene shugoshin-1 Neighboring gene uncharacterized LOC108339785 Neighboring gene xyloglucan endotransglucosylase/hydrolase protein 31-like Neighboring gene vacuolar protein sorting-associated protein 24 homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glucuronoxylan glucuronosyltransferase IRX7
Names
glucuronoxylan glucuronosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068974.1 Reference ASM1680809v1 Primary Assembly

    Range
    33264693..33267302
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017576647.2 → XP_017432136.2  probable glucuronoxylan glucuronosyltransferase IRX7

    UniProtKB/TrEMBL
    A0A0S3SCG5
Nucleotide Protein
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