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LOC108335120 probable xyloglucan endotransglucosylase/hydrolase protein 6 [ Vigna angularis (adzuki bean) ]

Gene ID: 108335120, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108335120
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 6
Locus tag
HKW66_Vig0159620
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC108335120 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 10 NC_068979.1 (4495171..4496743)
100 previous assembly Vigan1.1 (GCF_001190045.1) 6 NC_030642.1 (2126986..2128575)

Chromosome 10 - NC_068979.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2 Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein 2 Neighboring gene homeobox-leucine zipper protein HAT22 Neighboring gene branched-chain amino acid aminotransferase 2, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 6
Names
xyloglucan endotransglucosylase/hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068979.1 Reference ASM1680809v1 Primary Assembly

    Range
    4495171..4496743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017571059.2 → XP_017426548.2  probable xyloglucan endotransglucosylase/hydrolase protein 6

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases