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LOC108334045 endochitinase PR4 [ Vigna angularis (adzuki bean) ]

Gene ID: 108334045, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108334045
Gene description
endochitinase PR4
Locus tag
HKW66_Vig0213760
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108334045 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 11 NC_068980.1 (2593162..2594267)
100 previous assembly Vigan1.1 (GCF_001190045.1) 5 NC_030641.1 (28364722..28366090)

Chromosome 11 - NC_068980.1Genomic Context describing neighboring genes Neighboring gene polyadenylate-binding protein-interacting protein 3 Neighboring gene pentatricopeptide repeat-containing protein At2g13600 Neighboring gene uncharacterized LOC108334047 Neighboring gene pentatricopeptide repeat-containing protein At1g62350

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endochitinase PR4
Names
Endochitinase protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068980.1 Reference ASM1680809v1 Primary Assembly

    Range
    2593162..2594267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017569650.2 → XP_017425139.1  endochitinase PR4

    UniProtKB/TrEMBL
    A0A0L9UPF2
    Conserved Domains (2) summary
    cd00325
    Location:72 → 270
    chitinase_GH19; Glycoside hydrolase family 19, chitinase domain
    pfam00187
    Location:28 → 52
    Chitin_bind_1; Chitin recognition protein
Nucleotide Protein
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