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LOC108330589 probable pectate lyase 18 [ Vigna angularis (adzuki bean) ]

Gene ID: 108330589, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108330589
Gene description
probable pectate lyase 18
Locus tag
HKW66_Vig0082800
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108330589 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 4 NC_068973.1 (13361008..13363637, complement)
100 previous assembly Vigan1.1 (GCF_001190045.1) 4 NC_030640.1 (9343128..9345862, complement)

Chromosome 4 - NC_068973.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ and TAZ domain-containing protein 1 Neighboring gene uncharacterized LOC108330251 Neighboring gene uncharacterized LOC108331312 Neighboring gene protein STICHEL-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 18
Names
pectate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068973.1 Reference ASM1680809v1 Primary Assembly

    Range
    13361008..13363637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017565080.2 → XP_017420569.1  probable pectate lyase 18

    UniProtKB/TrEMBL
    A0A0L9UC82, A0A0S3RFP2
    Conserved Domains (1) summary
    smart00656
    Location:133 → 328
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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