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LOC108329661 F-box protein GID2 [ Vigna angularis (adzuki bean) ]

Gene ID: 108329661, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108329661
Gene description
F-box protein GID2
Locus tag
HKW66_Vig0059520
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108329661 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 2 NC_068971.1 (50615631..50617115, complement)
100 previous assembly Vigan1.1 (GCF_001190045.1) 3 NC_030639.1 (39163802..39165222, complement)

Chromosome 2 - NC_068971.1Genomic Context describing neighboring genes Neighboring gene putative ABC1 protein At2g40090 Neighboring gene GDSL esterase/lipase CPRD49 Neighboring gene GDSL esterase/lipase WDL1-like Neighboring gene DNA replication complex GINS protein PSF3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068971.1 Reference ASM1680809v1 Primary Assembly

    Range
    50615631..50617115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017563986.2 → XP_017419475.1  F-box protein GID2 isoform X2

    UniProtKB/TrEMBL
    A0A0S3S0S8
    Conserved Domains (1) summary
    pfam12937
    Location:45 → 84
    F-box-like; F-box-like

  2. XM_017563985.2 → XP_017419474.1  F-box protein GID2 isoform X1

    UniProtKB/TrEMBL
    A0A0L9UA72
    Conserved Domains (1) summary
    pfam12937
    Location:45 → 82
    F-box-like
Nucleotide Protein
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