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LOC108328968 sucrose synthase 2 [ Vigna angularis (adzuki bean) ]

Gene ID: 108328968, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108328968
Gene description
sucrose synthase 2
Locus tag
HKW66_Vig0058150
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108328968 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 2 NC_068971.1 (49462332..49472337)
100 previous assembly Vigan1.1 (GCF_001190045.1) 3 NC_030639.1 (38048827..38054078)

Chromosome 2 - NC_068971.1Genomic Context describing neighboring genes Neighboring gene lisH domain-containing protein C1711.05 Neighboring gene putative GTP diphosphokinase RSH1, chloroplastic Neighboring gene endoglucanase 17 Neighboring gene uncharacterized LOC108327850 Neighboring gene pectinesterase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068971.1 Reference ASM1680809v1 Primary Assembly

    Range
    49462332..49472337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017562903.2 → XP_017418392.1  sucrose synthase 2

    UniProtKB/TrEMBL
    A0A0L9UAA1, A0A0S3S0C2
    Conserved Domains (3) summary
    PLN00142
    Location:3 → 814
    PLN00142; sucrose synthase
    pfam00534
    Location:569 → 752
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:19 → 558
    Sucrose_synth; Sucrose synthase

RNA

  1. XR_008247352.1 RNA Sequence

  2. XR_008247351.1 RNA Sequence

  3. XR_008247357.1 RNA Sequence

  4. XR_008247354.1 RNA Sequence

  5. XR_008247358.1 RNA Sequence

  6. XR_008247355.1 RNA Sequence

  7. XR_008247353.1 RNA Sequence

  8. XR_008247356.1 RNA Sequence

  9. XR_008247359.1 RNA Sequence

Nucleotide Protein
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