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LOC108328138 vesicle transport v-SNARE 11 [ Vigna angularis (adzuki bean) ]

Gene ID: 108328138, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108328138
Gene description
vesicle transport v-SNARE 11
Locus tag
HKW66_Vig0109790
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108328138 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 2 NC_068971.1 (4039656..4042068)
100 previous assembly Vigan1.1 (GCF_001190045.1) 3 NC_030639.1 (2076307..2078681)

Chromosome 2 - NC_068971.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERN1 Neighboring gene CSC1-like protein HYP1 Neighboring gene uncharacterized LOC128195227 Neighboring gene pectinesterase 31 Neighboring gene pentatricopeptide repeat-containing protein At2g26790, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle transport v-SNARE 11; vesicle transport v-SNARE 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068971.1 Reference ASM1680809v1 Primary Assembly

    Range
    4039656..4042068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052872433.1 → XP_052728393.1  vesicle transport v-SNARE 11 isoform X1

    UniProtKB/TrEMBL
    A0A0L9U349, A0A0S3RRS9

  2. XM_017561948.2 → XP_017417437.1  vesicle transport v-SNARE 11 isoform X1

    UniProtKB/TrEMBL
    A0A0L9U349, A0A0S3RRS9
    Conserved Domains (2) summary
    cd15862
    Location:127 → 188
    SNARE_Vti1; SNARE motif of Vti1
    pfam05008
    Location:12 → 89
    V-SNARE; Vesicle transport v-SNARE protein N-terminus

  3. XM_017561950.2 → XP_017417439.1  vesicle transport v-SNARE 13 isoform X2

RNA

  1. XR_008246800.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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