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LOC108328109 laccase-17 [ Vigna angularis (adzuki bean) ]

Gene ID: 108328109, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108328109
Gene description
laccase-17
Locus tag
HKW66_Vig0042010
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108328109 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 2 NC_068971.1 (25828513..25831585, complement)
100 previous assembly Vigan1.1 (GCF_001190045.1) 3 NC_030639.1 (20269631..20272680, complement)

Chromosome 2 - NC_068971.1Genomic Context describing neighboring genes Neighboring gene protein MAIN-LIKE 1-like Neighboring gene protein FAR-RED ELONGATED HYPOCOTYL 1 Neighboring gene aspartic proteinase PCS1 Neighboring gene amino acid transporter AVT1D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-17
Names
Laccase-17 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068971.1 Reference ASM1680809v1 Primary Assembly

    Range
    25828513..25831585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017561906.2 → XP_017417395.1  laccase-17

    UniProtKB/TrEMBL
    A0A0L9U5I7, A0A0S3RVE0
    Conserved Domains (1) summary
    TIGR03389
    Location:37 → 584
    laccase; plant
Nucleotide Protein
Heading Accession and Version

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