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LOC108327740 syntaxin-71 [ Vigna angularis (adzuki bean) ]

Gene ID: 108327740, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108327740
Gene description
syntaxin-71
Locus tag
HKW66_Vig0052990
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC108327740 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 2 NC_068971.1 (43820498..43827308)
100 previous assembly Vigan1.1 (GCF_001190045.1) 3 NC_030639.1 (33477415..33482715)

Chromosome 2 - NC_068971.1Genomic Context describing neighboring genes Neighboring gene MLO-like protein 3 Neighboring gene probable E3 ubiquitin-protein ligase HIP1 Neighboring gene uncharacterized LOC128195392 Neighboring gene NAC domain-containing protein 2-like Neighboring gene zinc finger protein JACKDAW

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-71
Names
Syntaxin-71 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068971.1 Reference ASM1680809v1 Primary Assembly

    Range
    43820498..43827308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017561433.2 → XP_017416922.1  syntaxin-71

    UniProtKB/TrEMBL
    A0A0S3RYM7, A0A8T0L2E7
    Conserved Domains (1) summary
    cd15841
    Location:175 → 230
    SNARE_Qc; SNARE motif, subgroup Qc
Nucleotide Protein
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